Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015926971.1_cds_XP_016474885.1_66868
CDS Infomation

[gene=LOC107796606] [db_xref=GeneID:107796606] [protein=putative pentatricopeptide repeat-containing protein At1g02420] [protein_id=XP_016474885.1] [location=complement(23031..24551)] [gbkey=CDS]
Sequence

ATGGCTCGAATTTTCTCCTACAAGCATCTCTCTATTGCCCCTCAAACGAACAACCATTTT
CTTCCTTCTTCCCTCTACCTCCTCCATTCTCAATCCCCCCTTTCCACTGACAAAGAAGTT
GAAACACTTTACCGCATCATAACAATAACACAAACACCAGAGGGACTAAAACATTCACTC
AAATCATCACAAATCAGCTTATCAAACGACTTAATTGATAGAGTTCTCAAAAGGGTACGC
TTTTCTCACTCAAACCCATTACAAGCTTATGAGTTCTTTAAATTTGCAGCTAAGCGTAAA
GGGTTTTACCATACTGGTTTTTCTTTAGACACCATGTTGTATGTACTTGGTAGGAGTCGT
AAATTTGACAAGATTTGGGAGGTTTTAGTTGAGATGAAGAGAAAAGATCAATCTTTAATA
ACACCCAGAACAGTTCAAGTTGTTTTGGGTAGAGTTGCTAAGGTTTGTTCAGTTAGGCAA
ACTGTTGAGGCTTTTTGGGGCTTCAAAAAACTGTTGAAAGAGTTTGGTGTTGATTGTTTT
AATGCATTGTTGAGGGCTTTGTGTCAGGAGAAGAGCATGAGTGATGCAAGGAATGTGTAC
CATAGCTTGAAATGTAAGTTTAGGCCAAATTTGCAGACTTTTAATATACTTTTGTCCGGT
TGGAAGTCGTCGGAGGACGCAGAAGGATTTTTTGATGAGATGAGGGATTTGGGTGTTGAT
CCGGATGTTGTTTCATATAATTGTTTGGTGGATGTGTATTGCAAAGGGAGAGAGATGGAG
AAGGCATTTAAGGTGGTGAAGGAGATGAGAGAGAAGGATATTACTCCCGATGTGATAACT
TATACGAGTTTAATTGGAGGGTTGGGGTTGGTTGGACAACCCGATAAGGCGAGGGGTGTT
TTGAAGGATATGAGGGAGTATGGATGTTACCCGGATGTGGCAGCTTATAATGCTGCAATT
AGGAACTTCTGCATTGCGAAGAGGATTGGGGACGCATACAGTTTGATGGATGAGATGATA
ATGAATGGCTTGAGCCCCAACGCTACTACTTATAACGTGTTCTTAAGGTCATTTTTTTGG
GCAAATGATTTGAGAAGTTCGTGGAGTTTGTACCAGAGGATGAAGGAGACTTGGTGCTTA
CCGAGTACACAGTCATGTATGTTTTTGATCAGGTTGATCAGGAGACATGATAAGGTGGAG
ATGGCACTTGAGTTGTGGGATGACATGATGGAGAGAGGATTCGGCTCGTATATTTTGGTC
TCTGATGTTTTGTTTGATTTGCTTTGTGATCTGGGGAAGTTGGTGGAGGCAGAAAGATGT
TTCTTGCAAATGGTGGATAAAGGGCAAAAGCCAAGTAATGTTTCTTTTAGGAGGATCAAG
GTGCTTATGGAATTGGCTAATAAACAAGAGGCTCTTAAGGTTTTGTCAGAAAAGATGGCT
TCGTTTGGTTCCTCCACCCAACTGATCCAAGATGATAAAGCAGAATATGAACAATCAAGT
TCTGACTTTGCAACCTGCTGA

Peptide Sequence

PEP ID

XP_016474885.1
PEP Infomation

PREDICTED: putative pentatricopeptide repeat-containing protein At1g02420 [Nicotiana tabacum]
Sequence

MARIFSYKHLSIAPQTNNHFLPSSLYLLHSQSPLSTDKEVETLYRIITITQTPEGLKHSL
KSSQISLSNDLIDRVLKRVRFSHSNPLQAYEFFKFAAKRKGFYHTGFSLDTMLYVLGRSR
KFDKIWEVLVEMKRKDQSLITPRTVQVVLGRVAKVCSVRQTVEAFWGFKKLLKEFGVDCF
NALLRALCQEKSMSDARNVYHSLKCKFRPNLQTFNILLSGWKSSEDAEGFFDEMRDLGVD
PDVVSYNCLVDVYCKGREMEKAFKVVKEMREKDITPDVITYTSLIGGLGLVGQPDKARGV
LKDMREYGCYPDVAAYNAAIRNFCIAKRIGDAYSLMDEMIMNGLSPNATTYNVFLRSFFW
ANDLRSSWSLYQRMKETWCLPSTQSCMFLIRLIRRHDKVEMALELWDDMMERGFGSYILV
SDVLFDLLCDLGKLVEAERCFLQMVDKGQKPSNVSFRRIKVLMELANKQEALKVLSEKMA
SFGSSTQLIQDDKAEYEQSSSDFATC

Transcript Sequence

Gene sequence data has not been registered.